Quadruplex DNA-guided ligand selection from dynamic combinatorial libraries of acylhydrazones
نویسندگان
چکیده
Synthesis of dynamic combinatorial libraries acylhydrazones in the presence a G-quadruplex DNA template, followed by pull-down with streptavidin-coated magnetic beads, allows identification putative binders.
منابع مشابه
In vivo selection of RNA-binding peptides from combinatorial libraries.
We have used a two step procedure to identify peptides that bind strongly to the Rev-response element (RRE) of HIV. In the first step, RRE-binding peptides were screened from a combinatorial peptide library generated by "randomization" using a small subset of the 20 amino acids. In the second step, one such RRE-binding peptide, RSG-1, was "evolved" into an even stronger RRE-binding peptide usin...
متن کاملLate stage modification of receptors identified from dynamic combinatorial libraries.
Small molecule receptors are attractive potential sensors of post-translational modifications, including methylated lysine and methylated arginine. Using dynamic combinatorial chemistry (DCC), our lab previously identified a suite of receptors that bind to Kme3 with a range of affinities ranging from low micromolar to high nanomolar, each with a unique selectivity for Kme3 over the lower methyl...
متن کاملConstitutional self-selection from dynamic combinatorial libraries in aqueous solution through supramolecular interactions.
We describe the predominant formation of a specific constitution arising from the combination of building blocks with different topologies through disulphide chemistry in a Dynamic Combinatorial Library (DCL). The supramolecular interactions established by a zwitterionic cysteine moiety are responsible for the self-selection of one product from all the virtual members of a large library.
متن کاملDesign, preparation, and selection of DNA-encoded dynamic libraries.
We report a method for the preparation and selection of DNA-encoded dynamic libraries (DEDLs). The library is composed of two sets of DNA-linked small molecules that are under dynamic exchange through DNA hybridization. Addition of the protein target shifted the equilibrium, favouring the assembly of high affinity bivalent binders. Notably, we introduced a novel locking mechanism to stop the dy...
متن کاملG-Quadruplex DNA Bound by a Synthetic Ligand is Highly Dynamic
Using single molecule fluorescence resonance energy transfer, we investigated the interaction between a quadruplex-binding ligand and the human telomeric G-quadruplex. The binding of quinolinecarboxamide macrocycle to telomeric DNA was essentially irreversible and selectively induced and favored one quadruplex conformation. The ligand-quadruplex complex displayed intramolecular dynamics includi...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Organic and Biomolecular Chemistry
سال: 2021
ISSN: ['1477-0520', '1477-0539']
DOI: https://doi.org/10.1039/d0ob01908a